Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
117
ChIP-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
WGBS
16
pCHi-C
4
Hi-C
Assay category
275
Transcription
117
DNA binding
105
DNA accessibility
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
186
May, 2021
93
May, 2022
76
February, 2023
59
September, 2020
45
May, 2020
39
February, 2021
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
225
bigWig
180
bam
163
fastq
114
bed narrowPeak
112
zippedFastqFolder
96
tsv
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
517
Homo sapiens
Biosample type
517
primary cell
333
tissue
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
105
epithelium
105
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
277
HPAP
204
T1D
35
AMP
1
ITG
Genome assembly (visualization)
218
hg19
191
GRCh38
Lab
AMP-T2D consortium
277
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
lab.title!
Xin Sun, UCSD
AMP-T2D consortium
assay_title!
WGBS
BIOSAMPLE
ASSAY
517 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
1
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
+ See 37 more…
See all biosamples
Download