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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
117
ChIP-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
Assay category
275
Transcription
117
DNA binding
105
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
186
May, 2021
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
225
bigWig
180
bam
169
fastq
153
zippedFastqFolder
114
bed narrowPeak
102
tsv
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
564
Homo sapiens
Biosample type
564
primary cell
333
tissue
in vitro differentiated cells
47
cell line
2
stem cell
Organ
152
epithelium
152
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
324
HPAP
204
T1D
35
AMP
1
ITG
Genome assembly (visualization)
218
hg19
191
GRCh38
Lab
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
lab.title!
Xin Sun, UCSD
AMP-T2D consortium
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
564 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
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