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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
6
total RNA-seq
3
DNase-seq
2
RRBS
1
ATAC-seq
1
Hi-C
1
small RNA-seq
Assay category
14
DNA binding
7
Transcription
4
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
11
histone
11
histone modification
6
narrow histone mark
5
broad histone mark
3
control
Date released
13
June, 2019
5
December, 2019
5
July, 2019
4
August, 2021
1
October, 2019
Available data
25
bam
22
bigWig
15
bed narrowPeak
11
bigBed narrowPeak
7
bed bed3+
7
tsv
4
tagAlign
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
hdf5
Organism
28
Homo sapiens
Biosample type
443
tissue
401
cell line
28
primary cell
15
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
28
AMP
Genome assembly (visualization)
25
hg19
22
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
total RNA-seq
DNase-seq
RRBS
ATAC-seq
Hi-C
small RNA-seq
primary cell
hepatocyte
4
5
1
1
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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