Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
185
ChIP-seq
165
single cell RNA-seq
130
total RNA-seq
87
RNA microarray
25
pCHi-C
18
snATAC-seq
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
130
Transcription
Date released
50
August, 2021
25
February, 2020
20
May, 2022
14
October, 2019
13
February, 2023
4
July, 2018
2
March, 2020
1
May, 2021
1
May, 2023
Available data
931
tsv
bam
901
bigWig
103
fastq
59
txt
Organism
130
Homo sapiens
Biosample type
130
tissue
97
primary cell
9
cell line
9
in vitro differentiated cells
Organ
49
kidney
21
liver
19
eye
14
pancreas
12
brain
4
bone element
4
skeleton
3
adipose tissue
3
blood vessel
3
connective tissue
3
heart
3
limb
3
vasculature
2
artery
2
epithelium
2
musculature of body
1
nerve
1
spinal cord
Project
123
AMP
7
T1D
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
54
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
lab.title!
Xin Sun, UCSD
files.file_type!
bam
BIOSAMPLE
ASSAY
130 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
kidney
49
islet of Langerhans
26
liver
20
retina
3
pigmented layer of retina
2
+ See 30 more…
See all biosamples
Download