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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
280
ChIP-seq
260
ATAC-seq
178
DNase-seq
165
single cell RNA-seq
87
RNA microarray
25
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
1218
Transcription
460
DNA accessibility
280
DNA binding
16
3D chromatin structure
13
DNA methylation
Target of assay
628
histone modification
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
156
August, 2017
120
July, 2018
95
February, 2023
74
October, 2019
66
May, 2022
63
July, 2019
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
25
February, 2020
20
April, 2019
20
November, 2018
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1442
bam
1251
bigWig
1076
tsv
465
bed narrowPeak
304
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2104
Homo sapiens
Biosample type
2106
tissue
841
primary cell
623
cell line
282
in vitro differentiated cells
8
stem cell
Organ
512
connective tissue
454
adipose tissue
426
pancreas
291
liver
278
kidney
211
heart
158
bone element
80
brain
78
blood vessel
78
vasculature
72
limb
54
eye
54
musculature of body
53
artery
19
nerve
18
ureter
17
spleen
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2030
AMP
47
KPMP
29
T1D
Genome assembly (visualization)
1350
GRCh38
1309
hg19
Lab
1808
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
lab.title!
Xin Sun, UCSD
target.investigated_as!
histone
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
2106 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
298
20
68
1
4
7
3
1
4
adipose tissue
382
1
3
1
1
liver
167
81
20
2
1
1
1
1
3
kidney
49
7
75
13
64
6
1
1
bone element
84
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