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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
47
ATAC-seq
30
DNase-seq
Assay category
77
DNA accessibility
57
DNA binding
Target of assay
97
histone
97
histone modification
broad histone mark
40
narrow histone mark
17
transcription factor
11
RNA binding protein
Date released
35
February, 2023
33
June, 2019
20
April, 2019
20
May, 2024
12
February, 2021
8
May, 2019
4
July, 2019
2
October, 2019
Available data
174
bam
168
tsv
167
bigWig
134
bed narrowPeak
60
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
134
Homo sapiens
Biosample type
116
tissue
12
cell line
6
primary cell
Organ
412
liver
168
kidney
146
pancreas
142
brain
134
heart
111
epithelium
92
vasculature
88
blood vessel
60
artery
59
connective tissue
58
limb
54
blood
54
bodily fluid
44
musculature of body
33
eye
18
ureter
13
adipose tissue
11
nerve
10
embryo
10
spleen
8
bone element
8
skeleton
8
vein
1
pituitary gland
Project
134
AMP
Genome assembly (visualization)
133
GRCh38
76
hg19
Lab
114
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
lab.title!
Xin Sun, UCSD
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
coronary artery
3
36
2
heart
4
18
left cardiac atrium
20
1
heart left ventricle
14
2
3
right atrium auricular region
3
1
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
3
3
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