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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
7
DNase-seq
Assay category
12
DNA binding
7
DNA accessibility
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
Date released
12
August, 2017
4
June, 2019
2
November, 2018
1
October, 2019
Available data
664
bam
612
bigWig
410
tsv
376
fastq
196
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
19
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
hdf5
Organism
13
Homo sapiens
Biosample type
18
tissue
1
cell line
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
19
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
19
AMP
Genome assembly (visualization)
17
hg19
13
GRCh38
Lab
19
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
DNase-seq
tissue
pancreas
6
2
islet of Langerhans
6
body of pancreas
4
cell line
Panc1
1
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