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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
single cell RNA-seq
60
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
9
ATAC-seq
8
Hi-C
2
FAIRE-seq
Assay category
170
Transcription
27
DNA methylation
11
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
137
bigWig
131
bam
114
tsv
85
fastq
23
bed bedMethyl
23
bigBed bedMethyl
19
zippedFastqFolder
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
216
Homo sapiens
Biosample type
133
primary cell
83
tissue
Organ
65
epithelium
64
pancreas
25
heart
20
connective tissue
18
brain
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
157
AMP
59
HPAP
Genome assembly (visualization)
140
hg19
131
GRCh38
Lab
157
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
216 results
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Clear Filters
single cell RNA-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
FAIRE-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
3
15
2
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
+ See 31 more…
tissue
heart left ventricle
2
1
4
2
islet of Langerhans
6
1
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
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