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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
80
ATAC-seq
74
single cell RNA-seq
42
total RNA-seq
41
WGBS
31
ChIP-seq
22
snATAC-seq
Assay category
289
DNA accessibility
116
Transcription
41
DNA methylation
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
248
bed narrowPeak
242
bam
233
bigWig
210
bigBed narrowPeak
188
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
153
zippedFastqFolder
65
fastq
7
txt
Organism
477
Homo sapiens
Biosample type
248
primary cell
229
tissue
Organ
127
pancreas
119
epithelium
81
kidney
45
musculature of body
42
liver
35
heart
32
limb
30
brain
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
284
AMP
193
HPAP
Genome assembly (visualization)
226
hg19
213
GRCh38
Lab
220
AMP-T2D consortium
193
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
1
audit script error
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
477 results
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Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
73
21
pancreatic alpha cell
24
15
25
pancreatic beta cell
14
1
16
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 21 more…
tissue
liver
20
20
islet of Langerhans
18
6
heart
18
muscle of arm
17
kidney
13
+ See 37 more…
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