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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
3
control
Date released
30
June, 2019
12
July, 2019
2
November, 2018
1
October, 2017
1
October, 2019
Available data
46
bam
46
bigWig
32
bed bed3+
32
bed broadPeak
32
bed narrowPeak
32
bigBed broadPeak
32
bigBed narrowPeak
12
tsv
3
fastq
Organism
46
Homo sapiens
Biosample type
38
tissue
8
primary cell
Organ
491
connective tissue
478
pancreas
406
adipose tissue
197
epithelium
171
liver
166
kidney
153
heart
116
vasculature
114
blood vessel
103
artery
66
bone element
49
limb
46
brain
40
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
2
vein
1
pericardium
Project
46
AMP
Genome assembly (visualization)
46
GRCh38
41
hg19
Lab
46
AMP-T2D consortium
lab.title!
Xin Sun, UCSD
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
46 results
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DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
14
1
frontal cortex
2
1
1
cerebellum (Hemisphere)
1
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 12 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 2 more…
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