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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
18
July, 2019
12
February, 2020
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
50
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
24
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
66
Homo sapiens
Biosample type
54
tissue
12
primary cell
Organ
717
pancreas
529
connective tissue
417
adipose tissue
390
epithelium
300
kidney
252
heart
236
liver
159
bone element
130
vasculature
127
blood vessel
107
artery
66
brain
56
eye
56
limb
52
musculature of body
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
4
spleen
4
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
66
AMP
Genome assembly (visualization)
46
GRCh38
41
hg19
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Xin Sun, UCSD
assay_slims!
DNA binding
month_released!
March, 2020
BIOSAMPLE
ASSAY
66 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
caudate nucleus
1
1
+ See 19 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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