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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
34
DNase-seq
22
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
253
DNA binding
40
DNA accessibility
29
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
211
histone
211
histone modification
125
narrow histone mark
86
broad histone mark
42
control
3
RNA binding protein
3
transcription factor
Date released
128
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
13
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
285
bam
253
bigWig
230
bed narrowPeak
153
bigBed narrowPeak
118
tagAlign
49
bed broadPeak
40
bigBed broadPeak
37
bed bed3+
31
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
329
Homo sapiens
Biosample type
308
tissue
21
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
329
AMP
Genome assembly (visualization)
248
GRCh38
195
hg19
Lab
329
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
329 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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