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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
123
DNA binding
111
Transcription
10
DNA methylation
3
3D chromatin structure
3
DNA accessibility
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
22
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
5
June, 2019
3
May, 2021
2
February, 2020
1
February, 2023
Available data
160
bigWig
138
bed narrowPeak
135
bam
113
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
253
Homo sapiens
Biosample type
244
tissue
8
primary cell
1
in vitro differentiated cells
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
363
heart
276
kidney
248
brain
219
vasculature
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
253
AMP
Genome assembly (visualization)
131
GRCh38
91
hg19
Lab
213
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
lab.title!
Xin Sun, UCSD
organ_slims!
blood vessel
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
253 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
4
2
1
1
1
left cardiac atrium
40
18
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
heart
14
1
4
1
1
1
+ See 9 more…
primary cell
cardiac fibroblast
5
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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