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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
12
ATAC-seq
4
total RNA-seq
2
DNase-seq
2
Hi-C
FAIRE-seq
Assay category
17
DNA binding
14
DNA accessibility
4
Transcription
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
20
October, 2019
8
February, 2021
8
February, 2023
1
March, 2020
Available data
27
bam
20
bed narrowPeak
14
bigWig
12
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
1
bedpe bed3+
Organism
37
Homo sapiens
Biosample type
21
primary cell
16
tissue
Organ
944
pancreas
791
liver
684
connective tissue
523
epithelium
491
adipose tissue
393
heart
353
kidney
285
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
28
hg19
20
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Xin Sun, UCSD
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
2
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
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