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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
11
ChIP-seq
4
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
15
DNA accessibility
11
DNA binding
4
Transcription
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
narrow histone mark
2
control
Date released
15
October, 2019
8
February, 2021
8
February, 2023
1
March, 2020
Available data
22
bam
16
bed narrowPeak
10
bigWig
8
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
32
Homo sapiens
Biosample type
16
primary cell
16
tissue
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
24
hg19
15
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Xin Sun, UCSD
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
32 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
11
2
2
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
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