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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
2
Hi-C
1
RRBS
1
total RNA-seq
Assay category
7
DNA binding
2
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
5
histone
5
histone modification
4
broad histone mark
2
control
1
narrow histone mark
Date released
8
October, 2019
2
July, 2019
1
March, 2020
Available data
21
bam
16
bigWig
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
1
tsv
Organism
11
Homo sapiens
Biosample type
10
primary cell
1
tissue
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
11
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Xin Sun, UCSD
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
primary cell
endothelial cell of umbilical vein
7
2
pericardium fibroblast
1
tissue
pericardium
1
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