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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
329
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
329
DNA binding
12
DNA accessibility
Target of assay
352
transcription factor
88
recombinant protein
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
narrow histone mark
17
broad histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
35
November, 2018
25
December, 2018
15
October, 2019
14
February, 2021
13
August, 2021
11
November, 2019
9
January, 2019
1
March, 2020
1
May, 2021
Available data
518
bam
459
bigWig
364
fastq
341
bed narrowPeak
294
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
341
Homo sapiens
Biosample type
958
tissue
341
cell line
285
primary cell
126
in vitro differentiated cells
2
stem cell
Organ
256
liver
44
blood
44
bodily fluid
20
pancreas
14
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
339
AMP
2
T1D
Genome assembly (visualization)
338
hg19
300
GRCh38
Lab
328
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
20
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
18
inconsistent control read length
5
inconsistent control run_type
lab.title!
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
341 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
255
1
GM12878
44
EndoC_BH1
12
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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