Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
606
ChIP-seq
249
total RNA-seq
71
ATAC-seq
11
pCHi-C
8
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
606
DNA binding
253
Transcription
74
DNA accessibility
8
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
410
transcription factor
150
histone
150
histone modification
120
control
89
recombinant protein
RNA binding protein
75
broad histone mark
74
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
281
November, 2017
148
May, 2021
122
February, 2021
85
August, 2021
64
August, 2017
41
December, 2017
40
November, 2018
39
February, 2018
38
October, 2019
26
December, 2018
22
February, 2023
20
November, 2019
19
March, 2020
17
January, 2019
6
November, 2020
5
January, 2018
2
December, 2019
2
March, 2023
1
August, 2018
1
May, 2020
1
October, 2022
Available data
803
bam
712
bigWig
499
fastq
467
bed narrowPeak
309
bigBed narrowPeak
250
tsv
60
tagAlign
56
bed broadPeak
56
bigBed broadPeak
28
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
2
ibed
2
tar
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
976
Homo sapiens
Biosample type
2730
tissue
1078
primary cell
597
cell line
383
in vitro differentiated cells
10
stem cell
Organ
360
liver
100
epithelium
94
pancreas
93
connective tissue
67
heart
66
artery
66
blood vessel
66
vasculature
51
blood
51
bodily fluid
37
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
969
AMP
9
T1D
2
community
Genome assembly (visualization)
759
hg19
665
GRCh38
4
hg18
Lab
885
AMP-T2D consortium
47
Kyle Gaulton, UCSD
33
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
206
inconsistent ontology term
2
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
17
missing controlled_by
Audit category:
37
inconsistent control read length
5
inconsistent control run_type
1
inconsistent assembly
lab.title!
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
980 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
MeRIP-seq
STARR-seq
Capture-C
GRO-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
324
14
1
2
2
2
1
1
EndoC_BH1
14
33
19
1
6
2
3
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
50
1
Panc1
13
1
1
+ See 14 more…
in vitro differentiated cells
adipocyte
63
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
35
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 31 more…
See all biosamples
Download