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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
27
ChIP-seq
26
total RNA-seq
22
snATAC-seq
Assay category
286
DNA accessibility
60
Transcription
41
DNA methylation
27
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
RNA binding protein
4
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
244
bed narrowPeak
238
bam
226
bigWig
206
bigBed narrowPeak
188
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
134
zippedFastqFolder
24
fastq
7
txt
Organism
414
Homo sapiens
Biosample type
229
tissue
185
primary cell
Organ
108
pancreas
98
epithelium
80
kidney
45
musculature of body
42
liver
34
heart
32
limb
30
brain
18
ureter
17
connective tissue
7
vasculature
6
eye
5
blood vessel
2
artery
1
adipose tissue
Project
280
AMP
134
HPAP
Genome assembly (visualization)
222
hg19
206
GRCh38
Lab
216
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
24
inconsistent ontology term
1
audit script error
lab.title!
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
414 results
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Clear Filters
DNase-seq
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
18
6
heart
18
muscle of arm
17
kidney
13
+ See 37 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle satellite cell
8
cardiac fibroblast
3
4
+ See 21 more…
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