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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
32
ChIP-seq
26
total RNA-seq
22
snATAC-seq
1
Hi-C
Assay category
99
DNA accessibility
60
Transcription
41
DNA methylation
32
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
66
bed narrowPeak
57
fastq
56
bam
48
bigWig
28
bigBed narrowPeak
7
txt
1
bed bed3+
Organism
233
Homo sapiens
Biosample type
134
primary cell
73
tissue
26
cell line
Organ
104
pancreas
80
epithelium
41
liver
25
blood
25
bodily fluid
7
spleen
2
musculature of body
Project
134
HPAP
99
AMP
Genome assembly (visualization)
67
hg19
28
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
35
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
lab.title!
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
233 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
spleen
7
skeletal muscle tissue
1
1
cell line
GM12878
25
HepG2
1
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