Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
494
ChIP-seq
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
494
DNA binding
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
4
Transcription
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
59
December, 2017
54
August, 2017
51
May, 2020
34
November, 2018
25
August, 2021
20
May, 2022
6
July, 2019
6
October, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
Available data
465
bam
407
bigWig
403
fastq
385
bed narrowPeak
303
bigBed narrowPeak
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
544
Homo sapiens
Biosample type
333
cell line
189
tissue
13
in vitro differentiated cells
9
primary cell
Organ
544
liver
534
pancreas
385
epithelium
291
kidney
275
heart
266
brain
200
connective tissue
170
vasculature
165
blood vessel
115
limb
97
bone element
90
musculature of body
88
adipose tissue
84
artery
59
blood
59
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
544
AMP
Genome assembly (visualization)
411
hg19
321
GRCh38
Lab
503
AMP-T2D consortium
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
lab.title!
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
544 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
324
1
1
2
2
2
1
tissue
liver
144
20
2
3
1
1
1
1
1
right lobe of liver
9
1
2
1
2
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download