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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
7
ChIP-seq
5
STARR-seq
1
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
10
Transcription
7
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
24
August, 2021
1
March, 2019
Available data
10
tsv
3
bed narrowPeak
3
bigWig
2
bedpe bed3+
hic
1
bedpe
1
vcf
Organism
25
Homo sapiens
Biosample type
22
cell line
3
tissue
Organ
19
liver
3
pancreas
2
kidney
Project
25
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
3410
AMP-T2D consortium
331
Kyle Gaulton, UCSD
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
25
Bing Ren, UCSD
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
Xin Sun, UCSD
target.investigated_as!
transcription factor
files.file_type!
hic
BIOSAMPLE
ASSAY
25 results
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total RNA-seq
ChIP-seq
STARR-seq
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
7
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
1
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