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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
60
ChIP-seq
34
ATAC-seq
6
DNase-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
60
DNA binding
40
DNA accessibility
7
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
45
August, 2017
32
February, 2023
22
October, 2019
18
October, 2018
13
July, 2019
7
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
431
bam
413
bigWig
406
tsv
40
bed narrowPeak
27
fastq
10
bigBed narrowPeak
8
tagAlign
7
bed broadPeak
6
bed bed3+
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
533
Homo sapiens
Biosample type
527
tissue
6
primary cell
1
in vitro differentiated cells
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
534
AMP
Genome assembly (visualization)
442
hg19
412
GRCh38
Lab
534
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Xin Sun, UCSD
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
534 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
14
2
1
4
retina
3
15
3
subcutaneous adipose tissue
7
10
1
1
1
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primary cell
retinal pigment epithelial cell
2
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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