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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
13
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
WGBS
Assay category
33
DNA accessibility
13
DNA binding
6
Transcription
1
DNA methylation
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
Date released
41
June, 2019
5
July, 2019
5
May, 2019
2
March, 2020
Available data
53
bam
53
bigWig
46
bed narrowPeak
46
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
53
Homo sapiens
Biosample type
42
tissue
11
primary cell
Organ
616
pancreas
526
connective tissue
407
adipose tissue
285
epithelium
249
heart
245
liver
214
brain
196
kidney
182
vasculature
179
blood vessel
123
artery
96
limb
66
bone element
53
musculature of body
31
nerve
26
embryo
18
ureter
12
vein
10
spleen
8
skeleton
5
eye
3
blood
3
bodily fluid
1
pericardium
1
pituitary gland
Project
53
AMP
Genome assembly (visualization)
73
hg19
53
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
lab.title!
Xin Sun, UCSD
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
53 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
tissue
muscle of leg
13
5
1
muscle of arm
17
psoas muscle
2
skeletal muscle tissue
1
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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