Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1659ChIP-seq
  • 1234total RNA-seq
  • 254ATAC-seq
  • 212DNase-seq
  • 210single cell RNA-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1DNAme array
  • 1MPRA
Assay category
  • 1659DNA binding
  • 1462Transcription
  • 473DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 845histone modification
  • 844histone
  • 486transcription factor
  • 437narrow histone mark
  • 406broad histone mark
  • 326control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 670February, 2021
  • 411August, 2017
  • 406November, 2017
  • 314October, 2019
  • 296May, 2020
  • 218June, 2019
  • 168July, 2018
  • 164May, 2021
  • 151August, 2021
  • 120May, 2019
  • 108July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 49April, 2018
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 22October, 2017
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 6November, 2020
  • 4August, 2018
  • 3June, 2018
  • 2May, 2022
  • 1August, 2022
  • 1October, 2022
Available data
  • 3187bam
  • 2859bigWig
  • 1480bed narrowPeak
  • 1472tsv
  • 1163fastq
  • 1042bigBed narrowPeak
  • 320bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 265bed bed3+
  • 91txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2bed bed3
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 3799Homo sapiens
Biosample type
  • 2347tissue
  • 614cell line
  • 512primary cell
  • 327in vitro differentiated cells
  • 8stem cell
Organ
  • 724pancreas
  • 720liver
  • 664connective tissue
  • 489adipose tissue
  • 351epithelium
  • 317heart
  • 285brain
  • 201vasculature
  • 195blood vessel
  • 163kidney
  • 150bone element
  • 122limb
  • 106artery
  • 96musculature of body
  • 61blood
  • 61bodily fluid
  • 43nerve
  • 37embryo
  • 30eye
  • 25spleen
  • 22vein
  • 18ureter
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3800AMP
  • 8T1D
Genome assembly (visualization)
  • 2882hg19
  • 2782GRCh38
  • 5hg18
Lab
  • 3808AMP-T2D consortium
  • 320Kyle Gaulton, UCSD
  • 248Klaus Kaestner, Upenn
  • 128Katalin Susztak, Upenn
  • 40Karen Mohlke, UNC
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 330inconsistent ontology term
  • 28inconsistent control
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
BIOSAMPLE
ASSAY

3808 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
snATAC-seq
DNAme array
MPRA
tissue
islet of Langerhans7128634141111
adipose tissue2381213
liver1451472113111
bone element84
heart left ventricle35323181411
cell line
HepG236051211
EndoC_BH115331912
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
naive thymus-derived CD4-positive, alpha-beta T cell2122
in vitro differentiated cells
adipocyte67461
cardiomyocytes359
neural progenitor cell21710
pancreatic endoderm1841
cardiac precursors (cardiac muscle cell)1911
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2023 Regents of the University of California.

  • UC San Diego