Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
955
total RNA-seq
867
ChIP-seq
107
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
3
snDrop-seq
Assay category
1078
Transcription
867
DNA binding
DNA accessibility
38
DNA methylation
13
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
537
February, 2021
279
August, 2017
222
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
38
March, 2020
38
May, 2021
25
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
9
February, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
1
May, 2022
1
May, 2023
Available data
1656
bam
1508
bigWig
1074
tsv
555
bed narrowPeak
377
bigBed narrowPeak
330
fastq
238
tagAlign
93
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
1
tagAlign bed3+
Organism
2102
Homo sapiens
Biosample type
2110
tissue
584
cell line
341
primary cell
307
in vitro differentiated cells
8
stem cell
Organ
539
connective tissue
480
adipose tissue
404
pancreas
316
liver
233
brain
207
heart
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
41
kidney
40
nerve
32
artery
25
eye
23
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2106
AMP
4
T1D
Genome assembly (visualization)
1484
GRCh38
1465
hg19
Lab
2110
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
2110 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
286
71
4
1
1
liver
147
145
1
3
1
1
1
1
bone element
84
heart left ventricle
3
35
18
4
1
1
1
+ See 149 more…
See all biosamples
Download