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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1565
ChIP-seq
1175
total RNA-seq
296
ATAC-seq
182
DNase-seq
118
single cell RNA-seq
87
RNA microarray
37
pCHi-C
23
Hi-C
17
small RNA-seq
5
FAIRE-seq
5
GRO-seq
3
snDrop-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
Assay category
118
Transcription
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
6
August, 2021
6
February, 2021
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
1
May, 2022
1
November, 2018
1
September, 2018
Available data
113
tsv
100
bam
100
bigWig
94
fastq
8
csv
5
txt
Organism
118
Homo sapiens
Biosample type
102
primary cell
14
tissue
2
in vitro differentiated cells
Organ
heart
74
pancreas
70
epithelium
6
blood vessel
6
kidney
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
118
AMP
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
118
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
7
audit script error
assay_slims!
DNA methylation
organ_slims!
heart
BIOSAMPLE
ASSAY
118 results
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single cell RNA-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 13 more…
tissue
kidney
6
aorta
4
pulmonary artery
2
liver
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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