Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
73
ChIP-seq
6
ATAC-seq
2
DNase-seq
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
399
Transcription
73
DNA binding
8
DNA accessibility
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
438
bam
421
bigWig
399
tsv
41
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
482
Homo sapiens
Biosample type
482
tissue
primary cell
1
in vitro differentiated cells
Organ
700
liver
635
connective tissue
525
pancreas
483
adipose tissue
331
heart
264
brain
197
blood vessel
197
vasculature
158
bone element
139
artery
126
kidney
121
limb
112
epithelium
77
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
23
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
483
AMP
Genome assembly (visualization)
424
hg19
420
GRCh38
Lab
483
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA methylation
biosample_type!
primary cell
BIOSAMPLE
ASSAY
483 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
white fat cell
1
See all biosamples
Download