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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
670
February, 2021
406
November, 2017
396
August, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
163
May, 2021
151
August, 2021
120
May, 2019
103
February, 2023
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
77
bigWig
73
bam
65
tsv
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
81
Homo sapiens
Biosample type
59
tissue
22
primary cell
Organ
17
connective tissue
16
brain
15
heart
12
adipose tissue
9
blood vessel
9
vasculature
8
liver
8
musculature of body
7
epithelium
7
kidney
4
limb
4
pancreas
3
artery
1
pericardium
Project
81
AMP
Genome assembly (visualization)
76
hg19
71
GRCh38
Lab
81
AMP-T2D consortium
assay_slims!
DNA methylation
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
small RNA-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
gastrocnemius medialis
4
heart left ventricle
2
2
+ See 18 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
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