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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
343
ATAC-seq
212
DNase-seq
5
FAIRE-seq
2
snATAC-seq
Assay category
1659
DNA binding
1476
Transcription
562
DNA accessibility
50
DNA methylation
26
3D chromatin structure
Date released
187
June, 2019
100
May, 2020
89
February, 2023
33
October, 2019
29
May, 2021
26
November, 2019
22
February, 2021
14
September, 2018
11
August, 2017
10
August, 2021
10
November, 2018
8
July, 2019
7
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
2
November, 2020
1
August, 2022
1
May, 2022
Available data
386
bed narrowPeak
370
bam
309
bigWig
241
bigBed narrowPeak
209
bed bed3+
206
bed broadPeak
206
bigBed broadPeak
45
fastq
14
tsv
12
bed bed3
4
bed bedgraph
1
tar
1
txt
Organism
562
Homo sapiens
Biosample type
315
tissue
183
primary cell
33
in vitro differentiated cells
31
cell line
Organ
82
kidney
80
pancreas
77
heart
74
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
32
connective tissue
32
eye
18
ureter
12
bone element
12
skeleton
9
liver
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
562
AMP
Genome assembly (visualization)
402
hg19
353
GRCh38
Lab
562
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
2
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
562 results
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ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
tissue
coronary artery
36
2
islet of Langerhans
34
1
1
1
heart
18
retina
15
3
muscle of arm
17
+ See 59 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 56 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 3 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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