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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
ATAC-seq
186
DNase-seq
5
FAIRE-seq
1
snATAC-seq
Assay category
1305
Transcription
1174
DNA binding
402
DNA accessibility
21
3D chromatin structure
19
DNA methylation
Date released
164
June, 2019
45
May, 2020
42
February, 2023
26
November, 2019
22
February, 2021
18
October, 2019
14
September, 2018
13
May, 2021
10
August, 2017
10
August, 2021
10
November, 2018
7
July, 2019
6
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
2
November, 2020
1
May, 2022
Available data
345
bam
328
bed narrowPeak
284
bigWig
218
bigBed narrowPeak
186
bed bed3+
183
bed broadPeak
183
bigBed broadPeak
44
fastq
12
bed bed3
4
bed bedgraph
2
tsv
1
tar
1
txt
Organism
402
Homo sapiens
Biosample type
247
tissue
107
primary cell
33
in vitro differentiated cells
15
cell line
Organ
73
kidney
58
pancreas
50
epithelium
44
limb
39
heart
35
musculature of body
31
connective tissue
31
eye
24
brain
22
vasculature
20
blood vessel
18
ureter
14
artery
12
bone element
12
skeleton
8
adipose tissue
8
liver
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
Project
402
AMP
Genome assembly (visualization)
402
hg19
353
GRCh38
Lab
402
AMP-T2D consortium
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
23
inconsistent ontology term
1
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
402 results
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Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
21
1
1
retina
15
3
muscle of arm
17
heart
16
brain
1
14
+ See 47 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 45 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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