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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
14
total RNA-seq
GRO-seq
Assay category
22
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
Available data
36
bam
28
bigWig
26
fastq
14
bed narrowPeak
14
tsv
3
bed bed3+
Organism
36
Homo sapiens
Biosample type
28
in vitro differentiated cells
8
cell line
Organ
717
pancreas
714
liver
670
connective tissue
489
adipose tissue
347
epithelium
323
heart
254
brain
225
vasculature
221
blood vessel
158
bone element
137
artery
86
limb
82
kidney
63
musculature of body
61
blood
61
bodily fluid
57
eye
41
nerve
36
embryo
24
spleen
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
29
GRCh38
29
hg19
Lab
36
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
GRO-seq
DNase-seq
BIOSAMPLE
ASSAY
36 results
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Clear Filters
ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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