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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1659
ChIP-seq
1247
total RNA-seq
343
ATAC-seq
212
DNase-seq
211
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
3
snDrop-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Assay category
212
DNA accessibility
Date released
187
June, 2019
10
October, 2019
9
November, 2018
5
August, 2017
2
August, 2021
1
November, 2020
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
12
fastq
Organism
214
Homo sapiens
Biosample type
178
tissue
31
primary cell
4
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
21
epithelium
18
ureter
11
vasculature
10
pancreas
9
blood vessel
9
connective tissue
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
214
AMP
Genome assembly (visualization)
207
GRCh38
186
hg19
Lab
214
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
214 results
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Clear Filters
DNase-seq
Capture-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
EndoC_BH1
2
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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