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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1659
ChIP-seq
1247
total RNA-seq
343
ATAC-seq
212
DNase-seq
211
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
3
snDrop-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Assay category
212
DNA accessibility
28
DNA methylation
Date released
187
June, 2019
16
November, 2018
14
August, 2017
12
July, 2019
10
October, 2019
1
November, 2020
Available data
227
bam
226
bigWig
209
bed narrowPeak
209
bigBed narrowPeak
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
23
fastq
17
bed bedMethyl
17
bigBed bedMethyl
Organism
240
Homo sapiens
Biosample type
205
tissue
31
primary cell
3
cell line
1
in vitro differentiated cells
Organ
81
kidney
38
heart
37
limb
34
musculature of body
32
brain
19
epithelium
18
ureter
15
connective tissue
13
vasculature
12
pancreas
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
240
AMP
Genome assembly (visualization)
224
GRCh38
186
hg19
Lab
240
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
240 results
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Clear Filters
DNase-seq
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
muscle of leg
13
1
kidney
13
+ See 44 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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