Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1397
ChIP-seq
817
total RNA-seq
252
ATAC-seq
200
DNase-seq
133
single cell RNA-seq
31
pCHi-C
24
WGBS
18
Hi-C
17
RRBS
16
small RNA-seq
5
GRO-seq
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
1
DNAme array
1
MPRA
1
snATAC-seq
Assay category
18
3D chromatin structure
Date released
8
July, 2019
7
March, 2020
2
October, 2019
1
December, 2018
Available data
9
hic
8
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
1
fastq
Organism
18
Homo sapiens
Biosample type
11
tissue
6
primary cell
1
cell line
Organ
6
musculature of body
5
blood vessel
5
vasculature
4
epithelium
4
limb
3
brain
3
heart
3
liver
pancreas
2
vein
1
connective tissue
Project
18
AMP
Genome assembly (visualization)
13
hg19
Lab
18
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
1
audit script error
organ_slims!
pancreas
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
18 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
See all biosamples
Download