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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1600
ChIP-seq
1121
total RNA-seq
302
ATAC-seq
208
DNase-seq
202
single cell RNA-seq
32
pCHi-C
28
WGBS
21
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
3
RNA microarray
3
snDrop-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Assay category
202
Transcription
Target of assay
3
control
Date released
98
August, 2021
43
April, 2018
42
July, 2018
6
February, 2021
3
August, 2018
3
July, 2019
2
June, 2018
1
December, 2019
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
196
tsv
93
bam
93
bigWig
87
fastq
8
csv
5
txt
Organism
202
Homo sapiens
Biosample type
107
tissue
95
primary cell
Organ
93
heart
69
epithelium
69
pancreas
6
blood vessel
6
kidney
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
202
AMP
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
202
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
inconsistent ontology term
7
audit script error
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
202 results
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single cell RNA-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
6
+ See 12 more…
primary cell
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
pancreatic ductal cell
10
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