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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
2
ChIP-seq
1
Hi-C
1
total RNA-seq
Assay category
35
DNA accessibility
2
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
35
February, 2023
3
October, 2019
1
May, 2023
Available data
bam
2699
bigWig
1444
bed narrowPeak
1304
tsv
998
bigBed narrowPeak
940
fastq
281
bed broadPeak
267
bigBed broadPeak
258
bed bed3+
162
tagAlign
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
tagAlign bed3+
Organism
39
Homo sapiens
Biosample type
38
tissue
1
cell line
Organ
35
artery
35
blood vessel
35
heart
35
vasculature
2
brain
1
adipose tissue
1
connective tissue
1
pancreas
Project
39
AMP
Genome assembly (visualization)
125
hg19
39
GRCh38
5
hg18
Lab
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
39
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
files.file_type!
bam
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
tissue
coronary artery
35
adipose tissue
1
dorsal plus ventral thalamus
1
planum polare
1
cell line
Panc1
1
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