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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
532
ChIP-seq
501
total RNA-seq
175
DNase-seq
77
ATAC-seq
14
WGBS
14
small RNA-seq
6
single cell RNA-seq
Assay category
532
DNA binding
521
Transcription
252
DNA accessibility
14
DNA methylation
Target of assay
458
histone modification
457
histone
235
narrow histone mark
222
broad histone mark
71
transcription factor
17
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
162
June, 2019
162
May, 2020
161
October, 2019
142
August, 2017
116
July, 2018
92
May, 2019
66
February, 2021
64
April, 2019
57
November, 2017
51
July, 2019
40
October, 2018
38
May, 2021
38
November, 2019
36
December, 2017
35
February, 2023
21
November, 2018
12
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
September, 2017
Available data
1282
bam
1251
bigWig
768
bed narrowPeak
546
bigBed narrowPeak
521
tsv
256
fastq
198
bed bed3+
188
bed broadPeak
174
bigBed broadPeak
116
tagAlign
14
bed bedMethyl
14
bigBed bedMethyl
1
tagAlign bed3+
Organism
1313
Homo sapiens
Biosample type
1319
tissue
464
cell line
343
primary cell
265
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
adipose tissue
383
pancreas
238
liver
203
brain
151
heart
105
blood vessel
105
vasculature
96
limb
90
kidney
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1317
AMP
2
T1D
Genome assembly (visualization)
1319
GRCh38
1288
hg19
Lab
1319
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1319 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
islet of Langerhans
25
260
1
19
6
liver
75
147
2
1
bone tissue
58
coronary artery
3
2
36
body of pancreas
26
2
4
4
2
2
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