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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
571
histone modification
570
histone
434
transcription factor
293
narrow histone mark
276
broad histone mark
88
recombinant protein
86
RNA binding protein
33
chromatin remodeller
9
control
5
other context
5
other post-translational modification
Date released
13
November, 2017
7
November, 2018
6
January, 2019
3
December, 2017
2
August, 2017
2
December, 2018
Available data
33
bam
33
bed narrowPeak
33
bigWig
33
fastq
31
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
Organism
33
Homo sapiens
Biosample type
28
cell line
3
in vitro differentiated cells
2
tissue
primary cell
Organ
21
liver
10
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
33
AMP
Genome assembly (visualization)
35
hg19
33
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
12
inconsistent control read length
6
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
cell line
HepG2
18
GM12878
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
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