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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
DNase-seq
37
ChIP-seq
6
single cell RNA-seq
5
total RNA-seq
3
snDrop-seq
2
RNA microarray
2
pCHi-C
1
FAIRE-seq
1
RRBS
1
small RNA-seq
Assay category
70
DNA accessibility
37
DNA binding
12
Transcription
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
68
June, 2019
23
April, 2019
19
October, 2019
8
February, 2021
4
July, 2019
3
December, 2019
2
March, 2020
Available data
113
bam
103
bigWig
97
bed narrowPeak
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
18
tsv
5
csv
5
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
127
Homo sapiens
Biosample type
110
tissue
primary cell
17
cell line
Organ
706
liver
641
connective tissue
531
pancreas
489
adipose tissue
340
heart
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
127
kidney
122
limb
112
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
103
hg19
102
GRCh38
Lab
142
Katalin Susztak, Upenn
127
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
biosample_type!
primary cell
BIOSAMPLE
ASSAY
127 results
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DNase-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
snDrop-seq
RNA microarray
pCHi-C
FAIRE-seq
RRBS
small RNA-seq
tissue
kidney
13
27
6
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
glomerular visceral epithelial cell
1
1
RCC 7860 VHL
1
See all biosamples
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