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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
10
RRBS
6
Hi-C
4
ChIP-seq
3
total RNA-seq
2
DNase-seq
2
single cell RNA-seq
1
DNAme array
Assay category
69
DNA accessibility
11
DNA methylation
6
3D chromatin structure
5
Transcription
4
DNA binding
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
57
May, 2020
13
July, 2019
12
February, 2023
6
May, 2021
3
October, 2019
1
August, 2017
1
March, 2020
1
November, 2018
1
September, 2018
Available data
bam
388
bigWig
240
fastq
181
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
95
Homo sapiens
Biosample type
543
tissue
95
primary cell
49
in vitro differentiated cells
33
cell line
5
stem cell
Organ
12
epithelium
5
kidney
5
vasculature
4
blood vessel
4
brain
2
connective tissue
2
liver
2
vein
1
eye
1
heart
1
musculature of body
Project
95
AMP
Genome assembly (visualization)
16
hg19
Lab
324
Klaus Kaestner, Upenn
95
AMP-T2D consortium
59
Kyle Gaulton, UCSD
1
ITG
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
95 results
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ATAC-seq
RRBS
Hi-C
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
DNAme array
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
gabaergic neuron
3
glutamatergic neuron
3
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