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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
147
ChIP-seq
102
single cell RNA-seq
51
total RNA-seq
19
DNase-seq
7
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
171
DNA accessibility
155
Transcription
147
DNA binding
8
DNA methylation
6
3D chromatin structure
Target of assay
113
histone
113
histone modification
60
narrow histone mark
53
broad histone mark
29
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
48
July, 2018
43
April, 2018
42
June, 2019
24
July, 2019
23
October, 2019
20
May, 2021
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
398
bam
360
bigWig
240
fastq
162
tsv
159
bed narrowPeak
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
25
bed bed3+
16
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
488
Homo sapiens
Biosample type
2315
tissue
598
cell line
488
primary cell
340
in vitro differentiated cells
8
stem cell
Organ
254
epithelium
194
pancreas
38
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
488
AMP
Genome assembly (visualization)
385
hg19
317
GRCh38
Lab
488
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
kidney
BIOSAMPLE
ASSAY
488 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
7
13
12
10
pancreatic alpha cell
6
13
12
10
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
5
8
12
4
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
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