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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
946
total RNA-seq
865
ChIP-seq
178
DNase-seq
129
ATAC-seq
107
single cell RNA-seq
87
RNA microarray
27
WGBS
16
small RNA-seq
11
RRBS
6
Hi-C
4
FAIRE-seq
4
pCHi-C
3
snDrop-seq
2
snATAC-seq
Assay category
1069
Transcription
865
DNA binding
313
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
March, 2020
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
22
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1873
bam
1700
bigWig
1047
tsv
840
bed narrowPeak
561
bigBed narrowPeak
351
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
2
bedpe bed3+
2
hic
1
tagAlign bed3+
Organism
2377
Homo sapiens
Biosample type
2385
tissue
604
cell line
523
primary cell
332
in vitro differentiated cells
4
stem cell
Organ
546
connective tissue
487
adipose tissue
433
pancreas
318
liver
266
heart
263
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
110
kidney
77
musculature of body
73
artery
56
eye
43
nerve
24
spleen
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2385
AMP
Genome assembly (visualization)
1732
GRCh38
1694
hg19
Lab
2385
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
March, 2020
BIOSAMPLE
ASSAY
2385 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
small RNA-seq
RRBS
Hi-C
FAIRE-seq
pCHi-C
snDrop-seq
snATAC-seq
tissue
islet of Langerhans
284
69
1
32
1
1
1
4
1
adipose tissue
382
2
3
3
liver
146
145
2
1
3
1
1
bone element
84
heart left ventricle
2
35
3
2
18
4
1
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