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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
107
single cell RNA-seq
87
RNA microarray
86
ATAC-seq
54
total RNA-seq
24
pCHi-C
12
Hi-C
11
RRBS
10
WGBS
3
snDrop-seq
2
snATAC-seq
1
DNase-seq
Assay category
161
Transcription
145
DNA binding
89
DNA accessibility
21
DNA methylation
12
3D chromatin structure
Target of assay
127
histone
127
histone modification
66
narrow histone mark
61
broad histone mark
18
control
Date released
114
August, 2017
99
August, 2021
93
February, 2021
77
February, 2023
56
October, 2019
31
March, 2020
25
February, 2020
13
July, 2019
13
November, 2017
7
October, 2017
4
July, 2018
3
December, 2019
2
January, 2018
2
May, 2022
1
April, 2019
1
August, 2022
1
May, 2023
November, 2019
Available data
bam
1692
bigWig
1056
tsv
822
bed narrowPeak
561
bigBed narrowPeak
351
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
8
bedpe bed3+
8
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
541
Homo sapiens
Biosample type
542
tissue
95
primary cell
49
in vitro differentiated cells
32
cell line
5
stem cell
Organ
141
heart
92
bone element
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
37
pancreas
33
liver
15
epithelium
12
kidney
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
540
AMP
2
T1D
Genome assembly (visualization)
81
hg19
38
GRCh38
Lab
542
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
November, 2019
BIOSAMPLE
ASSAY
542 results
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ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
RRBS
WGBS
snDrop-seq
snATAC-seq
DNase-seq
tissue
bone element
84
islet of Langerhans
41
15
20
4
1
1
subcutaneous abdominal adipose tissue
36
3
coronary artery
35
1
liver
23
1
1
1
1
3
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