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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
pCHi-C
Assay category
22
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA accessibility
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
12
February, 2020
7
October, 2017
3
July, 2019
3
October, 2019
2
March, 2020
1
February, 2023
Available data
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
41
Homo sapiens
Biosample type
38
tissue
3
primary cell
Organ
140
heart
92
bone element
85
connective tissue
59
pancreas
53
eye
50
blood vessel
50
vasculature
49
adipose tissue
43
epithelium
41
brain
39
artery
37
liver
36
musculature of body
15
kidney
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
7
hg19
2
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
bed bedMethyl
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
tissue
brain
7
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
See all biosamples
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