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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
Hi-C
Assay category
12
3D chromatin structure
Date released
8
March, 2020
2
November, 2019
2
October, 2019
Available data
2896
bam
2610
bigWig
1415
bed narrowPeak
1357
tsv
1025
bigBed narrowPeak
1022
fastq
319
bed broadPeak
284
bigBed broadPeak
274
tagAlign
246
bed bed3+
95
txt
36
bed bedMethyl
bigBed bedMethyl
12
hic
11
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
1
tagAlign bed3+
Organism
12
Homo sapiens
Biosample type
9
tissue
in vitro differentiated cells
2
primary cell
1
cell line
Organ
3
blood vessel
3
epithelium
3
heart
3
pancreas
3
vasculature
2
musculature of body
2
vein
1
liver
Project
12
AMP
Genome assembly (visualization)
12
hg19
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigBed bedMethyl
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
12 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
2
cell line
EndoC_BH1
1
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