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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
130
ChIP-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
133
Transcription
130
DNA binding
30
DNA accessibility
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
38
narrow histone mark
34
broad histone mark
32
control
25
transcription factor
4
RNA binding protein
Date released
85
May, 2021
61
August, 2017
38
August, 2021
37
February, 2018
26
February, 2021
20
December, 2017
13
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
274
bam
232
bigWig
131
tsv
124
fastq
111
bed narrowPeak
40
tagAlign
bigBed narrowPeak
15
bed bed3+
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
306
Homo sapiens
Biosample type
1864
tissue
411
primary cell
306
in vitro differentiated cells
258
cell line
6
stem cell
Organ
84
connective tissue
26
embryo
9
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
306
AMP
Genome assembly (visualization)
251
hg19
233
GRCh38
4
hg18
Lab
306
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
files.file_type!
bigBed narrowPeak
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
306 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
5
61
5
cardiomyocytes
59
3
neural progenitor cell
7
21
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
16
1
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