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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
Assay category
27
DNA binding
Target of assay
23
histone
23
histone modification
14
broad histone mark
9
narrow histone mark
4
transcription factor
Date released
20
August, 2017
5
November, 2017
2
October, 2019
Available data
3131
bam
2803
bigWig
1489
bed narrowPeak
1488
tsv
1107
fastq
bigBed narrowPeak
307
bed broadPeak
303
tagAlign
272
bigBed broadPeak
259
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
27
Homo sapiens
Biosample type
21
tissue
4
cell line
2
primary cell
Organ
13
musculature of body
6
pancreas
4
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
27
AMP
Genome assembly (visualization)
27
hg19
Lab
27
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent control read length
files.file_type!
bigBed narrowPeak
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
4
primary cell
endothelial cell of umbilical vein
2
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