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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
131
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
147
DNA binding
133
Transcription
30
DNA accessibility
4
3D chromatin structure
Target of assay
80
histone
80
histone modification
40
narrow histone mark
39
broad histone mark
35
transcription factor
32
control
4
RNA binding protein
2
chromatin remodeller
Date released
85
May, 2021
67
August, 2017
39
February, 2018
38
August, 2021
29
December, 2017
26
February, 2021
13
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
291
bam
249
bigWig
141
fastq
131
tsv
128
bed narrowPeak
40
tagAlign
23
bed bed3+
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
323
Homo sapiens
Biosample type
1864
tissue
415
primary cell
323
in vitro differentiated cells
260
cell line
8
stem cell
Organ
90
connective tissue
29
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
323
AMP
Genome assembly (visualization)
268
hg19
250
GRCh38
4
hg18
Lab
323
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
323 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
5
cardiomyocytes
3
59
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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