Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
160
total RNA-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
ATAC-seq
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
182
DNA binding
164
Transcription
7
DNA methylation
3
3D chromatin structure
3
DNA accessibility
Target of assay
104
control
65
histone modification
64
histone
44
narrow histone mark
20
broad histone mark
13
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
66
November, 2017
48
August, 2017
13
December, 2017
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
2
November, 2018
1
December, 2018
1
February, 2020
Available data
681
bam
588
bigWig
465
fastq
407
bed narrowPeak
bigBed narrowPeak
165
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
362
Homo sapiens
Biosample type
272
tissue
77
cell line
12
primary cell
1
in vitro differentiated cells
Organ
651
connective tissue
634
pancreas
481
adipose tissue
362
liver
290
epithelium
259
heart
159
brain
158
bone element
153
vasculature
151
blood vessel
116
artery
59
kidney
55
eye
49
musculature of body
38
limb
37
embryo
17
nerve
16
skeleton
12
spleen
9
vein
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
362
AMP
Genome assembly (visualization)
236
hg19
205
GRCh38
Lab
362
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
organ_slims!
lymph node
BIOSAMPLE
ASSAY
362 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
ATAC-seq
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
107
147
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
67
5
1
1
2
1
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
Download